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Inflammatory Bowel Disease (IBD) and Free Fecal Water Syndrome in Horses

Stephanie Shen, DVM • November 4, 2025

Digestive health plays a critical role in overall equine well-being. Two conditions that often confuse horse owners—and are frequently under-diagnosed—are Inflammatory Bowel Disease (IBD) and Free Fecal Water (FFW) Syndrome. While they differ in severity and impact, both involve disruptions to the gastrointestinal (GI) tract and require thoughtful management.


This article provides a clear, practical overview of equine IBD and FFW, including causes, clinical signs, diagnostic approaches, and current management strategies.

 Inflammatory Bowel Disease (IBD) in Horses: What You Need to Know


What Is Equine IBD?

Inflammatory Bowel Disease (IBD) in horses is a condition characterized by an abnormal immune response to substances that are normally tolerated by the gut. These may include:

  • Dietary components
  • Normal gut bacteria
  • Parasites
  • Environmental antigens


This immune dysfunction damages the intestinal lining by disrupting tight junctions between intestinal cells and weakening the protective mucus barrier. As a result, bacteria and gastrointestinal contents can cross the intestinal wall—a phenomenon commonly referred to as “leaky gut.”

Once the barrier is compromised, immune cells infiltrate the intestinal tissue, leading to chronic inflammation. While the precise trigger for this immune response is still unknown, the downstream effects on digestion and nutrient absorption can be significant.


Common Clinical Signs of IBD in Horses

Horses with IBD may show a wide range of signs, which can vary in severity and consistency:

  • Mild or recurrent colic
  • Intermittent or inconsistent diarrhea
  • Progressive weight loss
  • Poor body condition despite adequate feed
  • Severe or acute colic episodes


These symptoms are often caused by:

  • Altered gut motility
  • Malabsorption and maldigestion
  • Poor nutrient utilization
  • Sugar overflow into the colon
  • Intestinal thickening or strictures that predispose to colic


Because signs can be subtle or overlap with other conditions, IBD is frequently under-diagnosed.


Diagnosing IBD in Horses

A definitive diagnosis of equine IBD typically requires a combination of exclusion testing and tissue sampling, including:


Biopsy Options

  • Rectal biopsy
  • Duodenal biopsy
  • Full-thickness intestinal biopsy (when indicated)


Additional Diagnostic Tools

  • Abdominal and thoracic ultrasound
  • Comprehensive bloodwork
  • Gastroscopy
  • Abdominal fluid analysis
  • Absorption or malabsorption tests


Early diagnosis is critical, as timely intervention can improve both clinical outcomes and long-term survival.


Treatment and Management of Equine IBD

While there is no cure for IBD, many horses respond well to long-term management strategies aimed at reducing inflammation and supporting gut function.


Medical Management

  • Steroid therapy is commonly used
  • Typically administered at relatively low doses
  • Often requires prolonged or lifelong treatment with very gradual tapers


Dietary Management

  • Small, frequent meals
  • High-fiber, forage-based diets
  • Complete feeds when needed
  • Hay, alfalfa pellets, or hay cubes to improve digestibility


Individual dietary responses vary, making ongoing monitoring and adjustments essential.


Free Fecal Water (FFW) Syndrome in Horses

What Is Free Fecal Water Syndrome?

Free Fecal Water (FFW) Syndrome is a condition in which a horse passes normal, formed manure alongside free-flowing liquid from the anus. While often considered a cosmetic issue, FFW can cause:

  • Chronic skin irritation
  • Scalding of the hind legs and tail
  • Discomfort and secondary skin infections


Causes and Current Research

Despite extensive investigation, no single cause of FFW has been identified. Research suggests that multiple factors may contribute, including:

  • Gastrointestinal dysregulation
  • Dietary composition
  • Stress and social dynamics
  • Altered hindgut fermentation

Because the underlying mechanism remains unclear, treatment must be highly individualized.


Managing Free Fecal Water in Horses

There is no universal treatment protocol for FFW. Successful management focuses on identifying and addressing potential GI disruptions and environmental stressors.


Management Strategies That May Help

Turnout and Stress Reduction

  • Adjusting turnout groups
  • Reducing herd size or social stress


Dietary Modifications

  • Gradual diet changes only
  • Free-choice hay for some horses
  • Chopped hay, hay pellets, chaff, or reduced long-stem forage for others
  • Psyllium husk supplementation
  • Table salt (approximately 0.5–2 tablespoons per day, as appropriate)


Supplements and Supportive Care

  • Omega-3 fatty acids to support normal inflammatory responses
  • Baker’s yeast to help stabilize hindgut fermentation
  • Carefully trialing medications or supplements under veterinary guidance


Responses vary widely, so systematic trials and close observation are key.


Skin Care and Hygiene for Horses with FFW

Because FFW often results in chronically wet skin on the hindquarters, proactive skin care is essential:

  • Keep hind legs and tail clean and dry
  • Clip excess hair if needed
  • Apply petroleum jelly or barrier creams to protect the skin
  • Monitor closely for lesions, scalding, or infection


Final Thoughts: Supporting Equine Gut Health

Both Inflammatory Bowel Disease and Free Fecal Water Syndrome highlight how complex and sensitive the equine digestive system can be. While IBD is a serious medical condition requiring veterinary diagnosis and long-term management, FFW is more common and typically less severe—but still deserving of attention.


Early recognition, individualized care, thoughtful dietary management, and ongoing monitoring can significantly improve comfort, performance, and quality of life for affected horses.


If you suspect GI dysfunction in your horse, consult your veterinarian early—digestive health issues are far easier to manage when addressed proactively rather than reactively.



This article was written by the veterinarians at North Bridge Equine Associates, an ambulatory equine veterinary practice serving horses in Massachusetts and surrounding regions. The information provided is intended for general educational purposes and is not a substitute for veterinary examination or care. 

North Bridge Equine Associates
978-337-1260 

info@northbridgeequine.com 

www.northbridgeequine.com 

Servicing Massachusetts, New Hampshire, and seasonal service to Aiken, South Carolina 


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